[ShortBRED](https://huttenhower.sph.harvard.edu/shortbred/) is a tool developed by the Huttenhower group for profiling specific protein families of interest using ...

Aging is a complex multifactorial process that greatly affects animal health. Multi-omics analysis is widely applied in evolutionary biology and biomedical research. However, whether multi-omics can ...

Table 1 Details of preterm infant cohort analysed in this study. Total metagenomic DNA was extracted from approximately 0.1 g of preterm infant fecal samples using either the PowerMax Soil DNA ...

Profiling microbial community function from metagenomic sequencing data remains a computationally challenging problem. Mapping millions of DNA reads from such samples to reference protein databases ...

ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the ...